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Publications

DeNoFo: a file format and toolkit for standardized, comparable de novo gene annotation Dohmen, Elias; Aubel, Margaux; Eicholt A, Lars; Roginski, Paul; Luria, Victor; Karger Amir; Grandchamp, Anna (2025) In: Bioinformatics, 41(10). Research article (journal)
De Novo Gene Emergence: Summary, Classification, and Challenges of Current Methods Grandchamp, Anna; Aubel, Margaux; Eicholt, A Lars; Roginski, Paul; Luria, Victor; Karger, Amir; Dohmen, Elias (2025) In: Genome Biology and Evolution, 17(11). Research article (journal)
Major changes in domain arrangements are associated with the evolution of termite castes Mikhailova A. Alina , Dohmen Elias , Harrison C. Mark (2024) In: Journal of Evolutionary Biology, 37(7). Research article (journal)
Comparative Evolutionary Genomics in Insects Feldmeyer, Barbara; Bornberg-Bauer, Erich; Dohmen, Elias; Fouks, Bertrand; Heckenhauer, Jaqueline; Huylmans, Ann Kathrin; Jones, Alun; Stolle, Eckart; Harrison, Mark C. (2024) Review article (book contribution)
Complex regulatory role of DNA methylation in caste- and age-specific expression of a termite Harrison C. Mark , Dohmen Elias , George Simon , Sillam-Dussès David , Séité Sarah , Vasseur-Cognet Mireille (2022) In: Open Biology, 12(9). Research article (journal)
New Genomic Signals Underlying the Emergence of Human Proto-Genes Grandchamp A, Berk K, Dohmen E, Bornberg-Bauer E (2022) In: Genes, 13. Research article (journal)
The modular nature of protein evolution: domain rearrangement rates across eukaryotic life Dohmen E, Klasberg S, Bornberg-Bauer E, Perrey S, Kemena C (2020) In: BMC Evolutionary Biology, 20(1). Research article (journal)
Author Correction: Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme Yang G, Anderson DW, Baier F, Dohmen E, Hong N, Carr PD, Kamerlin SCL, Jackson CJ, Bornberg-Bauer E, Tokuriki N (2020) In: Nature Chemical Biology, 16. Research article (journal)
Gene content evolution in the arthropods. Thomas, Gregg W. C.; Dohmen, Elias; Hughes, Daniel S. T.; Murali, Shwetha C.; Poelchau, Monica; Glastad, Karl; Anstead, Clare A.; Ayoub, Nadia A.; Batterham, Phillip; Bellair, Michelle; Binford, Gretta J.; Chao, Hsu; Chen, Yolanda H.; Childers, Christopher; Dinh, Huyen; Doddapaneni, HarshaVardhan; Duan, Jian J.; Dugan, Shannon; Esposito, Lauren A.; Friedrich, Markus; Garb, Jessica; Gasser, Robin B.; Goodisman, Michael A. D.; Gundersen-Rindal, Dawn E.; Han, Yi; Handler, Alfred M.; Hatakeyama, Masatsugu; Hering, Lars; Hunter, Wayne B.; Ioannidis, Panagiotis; Jayaseelan, Joy C.; Kalra, Divya; Khila, Abderrahman; Korhonen, Pasi K.; Lee, Carol Eunmi; Lee, Sandra L.; Li, Yiyuan; Lindsey, Amelia R. I.; Mayer, Georg; McGregor, Alistair P.; McKenna, Duane D.; Misof, Bernhard; Munidasa, Mala; Munoz-Torres, Monica; Muzny, Donna M.; Niehuis, Oliver; Osuji-Lacy, Nkechinyere; Palli, Subba R.; Panfilio, Kristen A.; Pechmann, Matthias; Perry, Trent; Peters, Ralph S.; Poynton, Helen C.; Prpic, Nikola-Michael; Qu, Jiaxin; Rotenberg, Dorith; Schal, Coby; Schoville, Sean D.; Scully, Erin D.; Skinner, Evette; Sloan, Daniel B.; Stouthamer, Richard; Strand, Michael R.; Szucsich, Nikolaus U.; Wijeratne, Asela; Young, Neil D.; Zattara, Eduardo E.; Benoit, Joshua B.; Zdobnov, Evgeny M.; Pfrender, Michael E.; Hackett, Kevin J.; Werren, John H.; Worley, Kim C.; Gibbs, Richard A.; Chipman, Ariel D.; Waterhouse, Robert M.; Bornberg-Bauer, Erich; Hahn, Matthew W.; Richards, Stephen (2020) In: Genome Biology, 21(15). Research article (journal)
DOGMA: a web server for proteome and transcriptome quality assessment Kemena C, Dohmen E, Bornberg-Bauer E (2019) In: Nucleic Acids Research, 47(W1). Research article (journal)