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Publications

msiFlow: automated workflows for reproducible and scalable multimodal mass spectrometry imaging and microscopy data analysis. Spangenberg P; Bessler S; Widera L; Bottek J; Richter M; Thiebes S; Siemes D; Krauß SD; Migas LG; Kasarla SS; Phapale P; Kleesiek J; Führer D; Moeller LC; Heuer H; Van de Plas R; Gunzer M; Soehnlein O; Soltwisch J; Shevchuk O; Dreisewerd K; Engel DR (2025) In: Nature Communications, 16(1), 1065-1065. doi:10.1038/s41467-024-55306-7 Research article (journal) \| Peer reviewed \| Published
Spatial biology using single-cell mass spectrometry imaging and integrated microscopy Potthoff A.; Schwenzfeier J.; Niehaus M.; Bessler S.; Hoffmann E.; Soehnlein O.; Höhndorf J.; Dreisewerd K.; Soltwisch J. (2025) In: Nature Communications, 16(1), 9129-9129. doi:10.1038/s41467-025-64603-8 Research article (journal) \| Peer reviewed \| Published
A 4-lineage Statistical Suite to Evaluate the Support of Large-Scale Retrotransposon Insertion Data to Reconstruct Evolutionary Trees Churakov, Gennady; Kuritzin, Andrej; Chukharev, Konstantin; Zhang, Fengjun; Wünnemann, Florian; Ulyantsev, Vladimir; Schmitz, Jürgen (2023) In: Systematic Biology, 72(3), 649-661. doi:10.1093/sysbio/syac082 Research article (journal) \| Peer reviewed \| Published
Homoplasy of Retrotransposon Insertions in Toothed Whales Doronina, Liliya; Ogoniak, Lynn; Schmitz, Jürgen (2023) In: Genes, 14(1830). doi:10.3390/genes14091830 Research article (journal) \| Peer reviewed \| Published
paPAML: An Improved Computational Tool to Explore Selection Pressure on Protein-Coding Sequences Steffen, R.; Ogoniak, L.; Grundmann, N.; Pawluchin, A.; Soehnlein, O.; Schmitz, J (2022) In: Genes, 2022. doi:10.3390/genes13061090 Research article (journal) \| Peer reviewed \| Published
Reunion of Australasian Possums by Shared SINE Insertions Doronina, Liliya; Feigin, Charles Y.; Schmitz, Jürgen (2022) In: Systematic Biology, 71(5), 1045-1053. doi:10.1093/sysbio/syac025 Research article (journal) \| Peer reviewed \| Published
ExoPLOT: Representation of alternative splicing in human tissues and developmental stages with transposed element (TE) involvement Zhang, Fengjun; Raabe, Carsten Alexander; Cardoso-Moreiera, Margarida; Brosius, Jürgen; Kaessmann, Henrik; Schmitz, Jürgen (2022) In: Genomics, 114, 110434. Research article (journal) \| Peer reviewed \| Published
Contradictory Phylogenetic Signals in the Laurasiatheria Anomaly Zone Doronina, Liliya Hughes, Graham M. Moreno‐Santillan, Diana Lawless, Colleen Lonergan, Tadhg Ryan, Louise Jebb, David Kirilenko, Bogdan M. Korstian, Jennifer M. Dávalos, Liliana M. Vernes, Sonja C. Myers, Eugene W. Teeling, Emma C. Hiller, Michael Jermiin, Lars S. Schmitz, Jürgen Springer, Mark S. Ray, David A. (2022) In: Genes, 13(766). doi:10.3390/genes13050766 Research article (journal) \| Peer reviewed \| Published
Euarchontoglires Challenged by Incomplete Lineage Sorting Doronina, Liliya Reising, Olga Clawson, Hiram Churakov, Gennady Schmitz, Jürgen (2022) In: Genes, 13(774). doi:10.3390/genes13050774 Research article (journal) \| Peer reviewed \| Published
Behavioural immune landscapes of inflammation Crainiciuc, Georgiana; Palomino-Segura, Miguel; Molina-Moreno, Miguel; Sicilia, Jon; Aragones, David G.; Li, Jackson Liang Yao; Madurga, Rodrigo; Adrover, Jose M.; Aroca-Crevillen, Alejandra; Martin-Salamanca, Sandra; Serrano del Valle, Alfonso; Castillo, Sandra D.; Welch, Heidi C. E.; Soehnlein, Oliver; Graupera, Mariona; Sanchez-Cabo, Fatima; Zarbock, Alexander; Smithgall, Thomas E.; Di Pilato, Mauro; Mempel, Thorsten R.; Tharaux, Pierre-Louis; Gonzalez, Santiago F.; Ayuso-Sacido, Angel; Ng, Lai Guan; Calvo, Gabriel F.; Gonzalez-Diaz, Ivan; Diaz-de-Maria, Fernando; Hidalgo, Andres (2022) In: Nature, 601, 415-421. doi:10.1038/s41586-021-04263-y Research article (journal) \| Peer reviewed \| Published